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What is the role of ribosomes in the process of protein synthesis during RNA transcription and translation? Explain the molecular mechanism behind how a ribosome reads the instructions encoded in mRNA and assembles amino acids into a polypeptide chain.

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Ribosomes play a crucial role in the process of protein synthesis during RNA transcription and translation. They are the cellular machinery responsible for translating the genetic information encoded in messenger RNA  mRNA  into a polypeptide chain, which eventually folds into a functional protein.The process of protein synthesis can be divided into two main stages: transcription and translation. In transcription, the genetic information in DNA is transcribed into mRNA by the enzyme RNA polymerase. The mRNA then carries this information from the nucleus to the cytoplasm, where the ribosomes are located.Translation is the process where ribosomes read the instructions encoded in the mRNA and assemble amino acids into a polypeptide chain. The molecular mechanism behind this process can be explained in the following steps:1. Initiation: The ribosome, which consists of two subunits  large and small , assembles around the mRNA. The small subunit binds to the mRNA at the start codon  AUG , which signals the beginning of the protein-coding sequence. The initiator tRNA, carrying the amino acid methionine, recognizes and binds to the start codon through complementary base pairing.2. Elongation: The large ribosomal subunit joins the complex, and the ribosome now has three sites for tRNA binding: the A  aminoacyl  site, P  peptidyl  site, and E  exit  site. The initiator tRNA occupies the P site, and the A site is ready to accept the next aminoacyl-tRNA that matches the second codon on the mRNA.The ribosome facilitates the complementary base pairing between the mRNA codon and the tRNA anticodon. Once the correct aminoacyl-tRNA binds to the A site, a peptide bond is formed between the amino acids in the P and A sites, catalyzed by the ribosome's peptidyl transferase activity. The polypeptide chain is transferred from the tRNA in the P site to the tRNA in the A site.Next, the ribosome moves  translocates  one codon along the mRNA, shifting the tRNAs and the growing polypeptide chain. The tRNA in the A site moves to the P site, and the tRNA in the P site moves to the E site, from where it is released. The A site becomes available for the next aminoacyl-tRNA to bind, and the process repeats.3. Termination: Elongation continues until the ribosome encounters a stop codon  UAA, UAG, or UGA  on the mRNA. These codons do not have corresponding tRNAs. Instead, a protein called a release factor recognizes the stop codon and binds to the A site. This triggers the hydrolysis of the bond between the polypeptide chain and the tRNA in the P site, releasing the completed polypeptide chain. The ribosome then dissociates into its subunits, and the mRNA is released.In summary, ribosomes play a central role in protein synthesis by reading the genetic information in mRNA and assembling amino acids into a polypeptide chain through a series of molecular interactions and reactions during the process of translation.
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