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How do chaperone proteins facilitate proper folding of newly synthesized polypeptide chains during protein synthesis? Include the role of ATP in the folding process in your answer.

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Chaperone proteins play a crucial role in facilitating the proper folding of newly synthesized polypeptide chains during protein synthesis. They ensure that proteins attain their correct three-dimensional structure, which is essential for their functionality. Misfolded proteins can lead to aggregation and cellular dysfunction, which may result in various diseases, such as neurodegenerative disorders and certain types of cancer.There are several types of chaperone proteins, including heat shock proteins  Hsp , chaperonins, and Hsp70 family proteins. These chaperones work together to assist in protein folding through different mechanisms.1. Preventing aggregation: Chaperone proteins bind to hydrophobic regions of the nascent polypeptide chains, preventing them from aggregating with other hydrophobic regions of other proteins. This binding provides a protective environment for the polypeptide to fold correctly.2. Facilitating folding: Chaperone proteins can also actively facilitate the folding process by binding to and stabilizing the intermediate conformations of the polypeptide chain. This helps the protein to fold into its correct structure more efficiently.3. Assisting in refolding: If a protein has misfolded, chaperone proteins can help in refolding the protein into its correct conformation by binding to the misfolded regions and providing a suitable environment for refolding.The role of ATP in the folding process is essential, as it provides the energy required for the chaperone proteins to function. ATP binding and hydrolysis regulate the conformational changes in chaperone proteins, allowing them to bind and release the polypeptide chains during the folding process.For example, in the Hsp70 family of chaperone proteins, ATP binding induces a conformational change that allows the chaperone to bind to the exposed hydrophobic regions of the nascent polypeptide chain. The hydrolysis of ATP to ADP causes another conformational change, which increases the affinity of the chaperone for the polypeptide chain, stabilizing the folding intermediate. The exchange of ADP for ATP then causes the chaperone to release the polypeptide chain, allowing it to fold further or interact with other chaperone proteins.In the case of chaperonins, such as the GroEL-GroES complex, the folding process occurs within a central cavity formed by the chaperonin complex. The polypeptide chain is encapsulated within this cavity, providing a favorable environment for folding. ATP binding and hydrolysis drive the conformational changes in the chaperonin complex, allowing the polypeptide chain to enter, fold, and be released from the cavity.In summary, chaperone proteins facilitate the proper folding of newly synthesized polypeptide chains during protein synthesis by preventing aggregation, actively assisting in folding, and helping in refolding misfolded proteins. ATP plays a critical role in this process by providing the energy required for the conformational changes in chaperone proteins, enabling them to bind, stabilize, and release the polypeptide chains during the folding process.
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